Autarchy of the Private Cave

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    Archive for the 'Links' Category

    Interesting and relevant links I found.

    Citation and reference managers for Linux: short overview

    29th October 2008

    For some period of time, I had to switch to my Windows installation when writing articles with references, because I keep my references database there and there is an extremely convenient add-on for MS Office to insert citations and format bibliography on the fly.

    However, it is quite inconvenient to make/run programs/scripts under Linux, and then switch to Windows to describe the obtained results in the article-like form. Thus, I briefly investigated available citation managers for Linux.
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    Posted in *nix, Links, Science, Software | 3 Comments »

    CLANS: CLuster ANalysis of Sequences

    25th October 2008

    CLANS (CLuster ANalysis of Sequences).
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    Posted in Bioinformatics, Links, Science | No Comments »

    Why I love Debian

    4th October 2008


    I love Debian, too.

    Though I prefer ‘testing’ (which is currently codenamed Lenny) over ‘stable’ (aka Etch).

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    Posted in *nix, Links, Misc | 1 Comment »

    How to ssh through the unconfigurable NAT/firewall

    20th September 2008

    There’s a how-to on the topic at howtoforge.com.

    Note, that for the suggested solution to work, NAT/firewall should be “transparent” for outgoing ssh connections.

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    Posted in *nix, Links | No Comments »

    Google Chrome is not for Linux?

    4th September 2008

    I’ve tried it already under Windows, but as my main OS is Debian, I can’t use it :(

    You can sign up for updates on Linux version.

    After reading the Google Chrome book, it is a long time waiting for it to be released for Linux….

    Also, I’m looking forward for the plugins to enhance Chrome. Although it did import my settings/passwords(?!)/bookmarks from Firefox, but it has no Foxmarks, AdBlock and some other goodies I’m now used to on all the computers I regularly use.

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    Posted in *nix, Links, Misc, Software, Web | No Comments »

    HospitalityClub.org and CouchSurfing.com

    4th September 2008

    These are the addresses for those who would like to travel lightly, meet new people, get new friends, hang out with interesting people, or just find a shelter for a night in the foreign country.

    I’m now registered in both systems (and getting “verified” in CS), and so far I stayed with three people (at two places) found via HC and CS. Both experiences were highly positive. Actually, my world outlook changed quite a bit after my first stay: I heard from someone that

    it’s better to trust wrong person once, than always distrust all the people

    But building trust, despite being central to HC ans CS, is only one – basic – component. Cultural exchange and knowledge sharing are also important, though so far I was unable to comprehend these components sufficiently to write on them.

    At the CouchSurfing.com website, it appears to be popular to put some test/quiz results into profiles. These are the tests:
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    Posted in Links, Misc, Society | 1 Comment »

    Debian-Med Project

    3rd September 2008

    There’s a Debian-Med project, aiming to

    develop Debian into an operating system that is particularly well fit for the requirements for medical practice and research

    Debian-Med has several web sites/pages: one at Debian.org (descriptive), and the actual project’s website at debian-med.alioth.debian.org. There’s also debian-med wiki (for developers).

    As of nowadays, Debian-Med has released a number of Debian packages, which are grouped into respective Debian Med Tasks. The Biology-dev task, for example, contains MCL and libsbml packages (among many others).

    Check this project out – you might find that the software you need is already available as Debian package.

    This post was stimulated by Steffen’s comment.

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    Posted in *nix, Links, Science, Software | No Comments »