Autarchy of the Private Cave

Tiny bits of bioinformatics, [web-]programming etc

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    Terminologies for Gene and Protein Similarity

    2nd February 2007

    Note: this is an excerpt (very slightly edited) from the original article Terminologies for Gene & Protein Similarity by Julius H. Jackson.

    Below the definitions of heterologs, homologs, analogs, paralogs, xenologs and orthologs are provided.
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    Posted in Bioinformatics, Science | No Comments »

    dotProject: first impressions

    2nd February 2007

    In my previous post on project management tools I stated that will try dotProject out. So I did, and here are my first impressions (mostly – what I dislike; the likes will come after some period of usage).
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    Posted in Misc, Software, Web | 7 Comments »

    419 Scambaiting

    30th January 2007

    Came across the 419 eater scambaiting site. I did get tons of scam emails, but never thought of them as of an opportunity to unveil the identity (or at least get a photo) of the scammer. This must be fun – unveiling scammers :) , especially when the scammer is pushed to waste his money for some fictional “hotel booking” or “identity proof donations”. It’s like reversing the roles of cat and mouse :) . Nice work, 419eater!

    Posted in Notepad | No Comments »

    Heed the warning: Game Over

    30th January 2007

    Avoid playing computer games.
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    Posted in Life, Society | No Comments »

    Proof (2005)

    29th January 2007

    Do not watch the “Proof”, unless you like long, boring, pseudo-scientific movies.
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    Posted in Movies | No Comments »

    The Three Burials of Melquiades Estrada (2005)

    27th January 2007

    Yesterday I watched this. This is the movie which can be said to “be different, not like others”.
    I will try not to retell the plot – for this, visit IMDB’s page for the three burials.
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    Posted in Movies | No Comments »

    dotProject 2.0.4/2.1.2/2.1.3 on shared hosting

    22nd January 2007

    Update: the same solution seems to still apply to dotProject 2.1.2; the post instructions have been modified for dP 2.1.2.

    Update 2: fsmullin suggested a method to fix a similar error in index_table.php, the files_count_max cannot be found error when you click the FILES tab/menu item. His suggestion is now incorporated into the post.

    Update 3: this post is still relevant for dotProject 2.1.3.

    In one of my recent posts about project management software I stated the desire to extensively test dotProject 2.0.4. However, many shared hosting providers appear incompatible with dotProject: the right to CREATE TEMPORARY TABLES in MySQL is not granted, but is needed by dotProject.

    Here’s sample error (2.0.4):

    query failed(CREATE TEMPORARY TABLE tasks_sum SELECT task_project, COUNT(distinct task_id) AS total_tasks,
    SUM(task_duration * task_percent_complete * IF(task_duration_type = 24, 8.0, task_duration_type))/
    SUM(task_duration * IF(task_duration_type = 24, 8.0, task_duration_type)) AS project_percent_complete FROM `tasks` GROUP BY task_project)

    For 2.1.2, sample error would be:

    Table ‘tasks_total’ doesn’t exist

    I tried looking for solutions, and here’s what I found…
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    Posted in PHP, Programming, Software, Web | 10 Comments »