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> <channel><title>Autarchy of the Private Cave &#187; affy</title> <atom:link href="https://bogdan.org.ua/tags/affy/feed" rel="self" type="application/rss+xml" /><link>https://bogdan.org.ua</link> <description>Tiny bits of bioinformatics, [web-]programming etc</description> <lastBuildDate>Wed, 28 Dec 2022 16:09:04 +0000</lastBuildDate> <language>en-US</language> <sy:updatePeriod>hourly</sy:updatePeriod> <sy:updateFrequency>1</sy:updateFrequency> <generator>https://wordpress.org/?v=3.8.27</generator> <item><title>How to create custom Affymetrix CDF file</title><link>https://bogdan.org.ua/2009/03/23/how-to-create-custom-affymetrix-cdf-file.html</link> <comments>https://bogdan.org.ua/2009/03/23/how-to-create-custom-affymetrix-cdf-file.html#comments</comments> <pubDate>Mon, 23 Mar 2009 12:01:41 +0000</pubDate> <dc:creator><![CDATA[Bogdan]]></dc:creator> <category><![CDATA[how-to]]></category> <category><![CDATA[Links]]></category> <category><![CDATA[Science]]></category> <category><![CDATA[affy]]></category> <category><![CDATA[Affymetrix]]></category> <category><![CDATA[annotation]]></category> <category><![CDATA[CDF]]></category> <category><![CDATA[R]]></category> <guid
isPermaLink="false">http://bogdan.org.ua/?p=631</guid> <description><![CDATA[First, learn about custom CDFs and why they are needed. The aroma.affymetrix R package google group has a how-to: create a CDF annotation file from scratch. Also useful: how to convert CDF into an R package, which has all CDF data available (as a PDF with more details).]]></description> <content:encoded><![CDATA[<p>First, learn about <a
href="http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/cdfreadme.htm#Reasons_for_generating_custom_CDF_files_for_Affymetrix_GeneChips_">custom <abbr
title="Chip Description File">CDF</abbr>s</a> and why they are needed.</p><p>The <a
href="http://groups.google.com/group/aroma-affymetrix">aroma.affymetrix R package</a> google group has a <a
href="http://aroma-project.org/node/40" class="broken_link" rel="nofollow">how-to: create a CDF annotation file from scratch</a>.</p><p>Also useful: <a
href="http://rss.acs.unt.edu/Rdoc/library/makecdfenv/html/make.cdf.package.html" class="broken_link" rel="nofollow">how to convert CDF into an R package</a>, which has all CDF data available (as a PDF with <a
href="http://www.bioconductor.org/packages/2.3/bioc/vignettes/makecdfenv/inst/doc/makecdfenv.pdf">more details</a>).</p><p><a
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