Comments on: COTRASIF: conservation-aided transcription factor binding site finder https://bogdan.org.ua/2008/05/20/cotrasif-conservation-aided-transcription-factor-bindin-site-finder.html Tiny bits of bioinformatics, [web-]programming etc Mon, 01 Jan 2024 17:12:20 +0000 hourly 1 https://wordpress.org/?v=3.8.27 By: The 9th ICSB-2008 in Gothenburg, Swedenhttps://bogdan.org.ua/2008/05/20/cotrasif-conservation-aided-transcription-factor-bindin-site-finder.html#comment-106565 Tue, 08 Jun 2010 05:23:47 +0000 http://bogdan.org.ua/?p=295#comment-106565 [...] there was some interest in the tool I presented – the COTRASIF. Although it is not strictly systems-biology (actually, it is pure genomics tool), there were [...]

]]> By: Bogdanhttps://bogdan.org.ua/2008/05/20/cotrasif-conservation-aided-transcription-factor-bindin-site-finder.html#comment-105121 Tue, 13 Apr 2010 14:02:26 +0000 http://bogdan.org.ua/?p=295#comment-105121 Comment form doesn’t do anything, please use proper address.

Also, using custom promoters is not supported – only internal database of promoters is searched. If you prefer to work with your sequences, please download standalone version.

]]> By: Mehdihttps://bogdan.org.ua/2008/05/20/cotrasif-conservation-aided-transcription-factor-bindin-site-finder.html#comment-105116 Tue, 13 Apr 2010 11:23:52 +0000 http://bogdan.org.ua/?p=295#comment-105116 >readseq-5371_tmp_1 101 bp
CGTCTGGAAGACACAGGCAGATAGCGCTCGCCTCAGTTTCTCCCACCCCCACAGCTCTGC
TCCTCCACCCACCCAGGGGGCGGGGCCAGAGGTCAAGGCTA

]]> By: Bogdanhttps://bogdan.org.ua/2008/05/20/cotrasif-conservation-aided-transcription-factor-bindin-site-finder.html#comment-102204 Wed, 02 Sep 2009 10:36:27 +0000 http://bogdan.org.ua/?p=295#comment-102204 Comment form doesn’t do anything, please use proper address.

Also, using custom promoters is not supported – only internal database of promoters is searched. If you prefer to work with your sequences, please download standalone version.

]]> By: Grumohttps://bogdan.org.ua/2008/05/20/cotrasif-conservation-aided-transcription-factor-bindin-site-finder.html#comment-102203 Wed, 02 Sep 2009 10:15:07 +0000 http://bogdan.org.ua/?p=295#comment-102203 TATAGGTTGTTTTAATTGGAAGCAAACCCAGTTTCATTACCTCAAGCAAATTTCTTCATCTCTTTTAGCTTCCGT
TTCTCATCTCTTTTTTTTTTTTGAGATAGAGTCTTGCTCTGTCGCACAGGCTGGGTTGGGTGCAGTGGTGCGATC
TTGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCTGAATAGCTGGGACTACA
GGCGCCTGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGC
CTCCATCTCCTGACTCCGTGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCGC
CCGGCAGTCCGTTTCTCATCTTTAAAGTGAGAGTGCTAACACGCACATGGAGGGCTACTATGAGAATGGAGTGAG
ATTTTGTATATGAAGTAGCAAAGACAGAGCCTGGGACTTAGTAGGTACATTATTAAGAGTTGGAGCCATTTTTTA
AACCTTTTGTCTTTTTGTTATTTTTGCTGTTCTGAAAGTCTCTAAGCTTTTAAAAATGGTCTCTTATTTTACTAT
TCTTGAATTGTTTCACGCTTCTCAACTCATGACAAGAACCTATTCTGCCAATGAACCTCCTGCCCCCATCTATTG
AAATTAAAGCTTAGGAGCACCAGTGCATCCCAGAATTTGACTTCCTTCCAGTGGAGAGACCCCTTGGGTTTTTCG
TGTGCTCTTTCCCTGATCCTTTAGGTGTCACATGGTCAGAAAGAACATAGTATTATTTATAAACAATATGCTCTC
TAACTTCAGAAAGATTTAGGACAGCTTTCTGGATTTGGTCATGCATGAAACAGGAAAAACAGGCTATTAGAAAAT
TGTGTGAAGTCTAACAGGGACTTGATATGAATTCATTTTGATTTTTAAAACTGAGGACTGCAATCATTAATCAGT
TCATTAAATTAATTGGAATAAGTATATTGCATGTAGTGAGAGTAGTAGTATTTTTTGAAATTTTAGTTTTAATTA
TATCCTATGGCCTGTGTTGTAAGATTTTTTATTTTAAGAGTTTAAAAGCCATTCGATTAAGCAACTAGTAGTAAA
CTTTTCTGTCTCTCATTAGTTGTTAAATCTAGAAAAGTTATTGGTTTAACAAACCTTTATTGGATATCTATTTTG
CATCAGATTTTTTTCTACATGAATGACATTTTTTTCTCTCTCTTTTCTAATACTGATTTGTTGCAGTGTCGAATA
GGTACCTGGGTCAACTCCACACACTTCTCACTCTTCACTGGACCTCTGGTACAAGATTGAGAGGATTCCTATTAC
TTACAAACAGACTAGGTATTAAAACAAAAAGATTCCCGAATAGAGTGAACCTAACCTAGAGCCCCTAAGAATTAC
ATCAGCTTTAACCATTAATTCCCTGGGTTCTTCTTATTCAGTAATGTCTTAAAACCTTTTTATCAGTATGGGATG
GGCGGGCAAGGGGATAAAGAAACTGGCGGCTGGTGGGAAGCCTTAGGTAAGGCTGTCAGGGGGGCTTTAGTTTGG
GAGTGGGATAATTTGCTGAGGAAGGGTGGGAGAAACGTGAACTAGCACACAAAAGGCTGTTTCCGGCTCAAATTT
CGTTACCAAGGCTCTTTGAGATGAACTTTTTTGGGGGAAAACAATCAGTCTAAAAGAGCTGTGTCTTCTTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAGGGGGCGGCGAGGGTCCCCACTTTTAGTATGAGTAGCA
TTGTTCACATGTTTGCCAGTATTTTGGAGCCTGGCAGGCCTGGGTAGAGGCTGCGGGGGACGCCTCCAAGTTCCC
ACCCGGGACATCCTGAACAGCAGCAGCCACAACAACAGGCTCGCCCCTAGACAAAGGGGCCGGCGCGGCGGAGCA
GACTGGTGCAGCCTGGGCCGCGCGCTCAGAGCGCTGGGCGTCTGGGCAGCTGAGTGGGCAGAGCTGACCCGGTGC
GGGTGGGAGTCAGGGCGCCCGGAAAACCCGGCTCTGGGTAGCAGACCCCGCCCGGGCTGGCTCGGCGCCGGGCCT
TCGGGCTTCCACTCAGTCTTTGACCCTCGGTCCTCGCTCAGCGGCCCGGCAGGCCGCACAACTGTAACCGCTGCC
CCGGCCGCCGCCCGCTCCTTCTCGGTCCGGCGGGCACAGAGCGCAGCGCGGCGGGGCCGGCGGC

]]> By: BGRS-2008 conference in Novosibirsk, Russia » Autarchy of the Private Cavehttps://bogdan.org.ua/2008/05/20/cotrasif-conservation-aided-transcription-factor-bindin-site-finder.html#comment-74180 Wed, 09 Jul 2008 23:57:48 +0000 http://bogdan.org.ua/?p=295#comment-74180 [...] some work in genomics (namely, our COTRASIF tool) [...]

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